JacobiSVD.h

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// This file is part of Eigen, a lightweight C++ template library
// for linear algebra.
//
// Copyright (C) 2009-2010 Benoit Jacob <jacob.benoit.1@gmail.com>
// Copyright (C) 2013-2014 Gael Guennebaud <gael.guennebaud@inria.fr>
//
// This Source Code Form is subject to the terms of the Mozilla
// Public License v. 2.0. If a copy of the MPL was not distributed
// with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
 
#ifndef EIGEN_JACOBISVD_H
#define EIGEN_JACOBISVD_H
 
#include "./InternalHeaderCheck.h"
 
namespace Eigen {
 
namespace internal {
 
// forward declaration (needed by ICC)
// the empty body is required by MSVC
template <typename MatrixType, int Options, bool IsComplex = NumTraits<typename MatrixType::Scalar>::IsComplex>
struct svd_precondition_2x2_block_to_be_real {};
 
 
enum { PreconditionIfMoreColsThanRows, PreconditionIfMoreRowsThanCols };
 
template<typename MatrixType, int QRPreconditioner, int Case>
struct qr_preconditioner_should_do_anything
{
  enum { a = MatrixType::RowsAtCompileTime != Dynamic &&
             MatrixType::ColsAtCompileTime != Dynamic &&
             MatrixType::ColsAtCompileTime <= MatrixType::RowsAtCompileTime,
         b = MatrixType::RowsAtCompileTime != Dynamic &&
             MatrixType::ColsAtCompileTime != Dynamic &&
             MatrixType::RowsAtCompileTime <= MatrixType::ColsAtCompileTime,
         ret = !( (QRPreconditioner == NoQRPreconditioner) ||
                  (Case == PreconditionIfMoreColsThanRows && bool(a)) ||
                  (Case == PreconditionIfMoreRowsThanCols && bool(b)) )
  };
};
 
template <typename MatrixType, int Options, int QRPreconditioner, int Case,
          bool DoAnything = qr_preconditioner_should_do_anything<MatrixType, QRPreconditioner, Case>::ret>
struct qr_preconditioner_impl {};
 
template <typename MatrixType, int Options, int QRPreconditioner, int Case>
class qr_preconditioner_impl<MatrixType, Options, QRPreconditioner, Case, false> {
 public:
  void allocate(const JacobiSVD<MatrixType, Options>&) {}
  bool run(JacobiSVD<MatrixType, Options>&, const MatrixType&) { return false; }
};
 
 
template <typename MatrixType, int Options>
class qr_preconditioner_impl<MatrixType, Options, FullPivHouseholderQRPreconditioner, PreconditionIfMoreRowsThanCols,
                             true> {
 public:
  typedef typename MatrixType::Scalar Scalar;
  typedef JacobiSVD<MatrixType, Options> SVDType;
 
  enum { WorkspaceSize = MatrixType::RowsAtCompileTime, MaxWorkspaceSize = MatrixType::MaxRowsAtCompileTime };
 
  typedef Matrix<Scalar, 1, WorkspaceSize, RowMajor, 1, MaxWorkspaceSize> WorkspaceType;
 
  void allocate(const SVDType& svd) {
    if (svd.rows() != m_qr.rows() || svd.cols() != m_qr.cols())
    {
      internal::destroy_at(&m_qr);
      internal::construct_at(&m_qr, svd.rows(), svd.cols());
    }
    if (svd.m_computeFullU) m_workspace.resize(svd.rows());
  }
 
  bool run(SVDType& svd, const MatrixType& matrix) {
    if(matrix.rows() > matrix.cols())
    {
      m_qr.compute(matrix);
      svd.m_workMatrix = m_qr.matrixQR().block(0,0,matrix.cols(),matrix.cols()).template triangularView<Upper>();
      if(svd.m_computeFullU) m_qr.matrixQ().evalTo(svd.m_matrixU, m_workspace);
      if(svd.computeV()) svd.m_matrixV = m_qr.colsPermutation();
      return true;
    }
    return false;
  }
 
private:
  typedef FullPivHouseholderQR<MatrixType> QRType;
  QRType m_qr;
  WorkspaceType m_workspace;
};
 
template <typename MatrixType, int Options>
class qr_preconditioner_impl<MatrixType, Options, FullPivHouseholderQRPreconditioner, PreconditionIfMoreColsThanRows,
                             true> {
 public:
  typedef typename MatrixType::Scalar Scalar;
  typedef JacobiSVD<MatrixType, Options> SVDType;
 
  enum {
    RowsAtCompileTime = MatrixType::RowsAtCompileTime,
    ColsAtCompileTime = MatrixType::ColsAtCompileTime,
    MaxRowsAtCompileTime = MatrixType::MaxRowsAtCompileTime,
    MaxColsAtCompileTime = MatrixType::MaxColsAtCompileTime,
    MatrixOptions = MatrixType::Options
  };
 
  typedef typename internal::make_proper_matrix_type<Scalar, ColsAtCompileTime, RowsAtCompileTime, MatrixOptions,
                                                     MaxColsAtCompileTime, MaxRowsAtCompileTime>::type
      TransposeTypeWithSameStorageOrder;
 
  void allocate(const SVDType& svd) {
    if (svd.cols() != m_qr.rows() || svd.rows() != m_qr.cols())
    {
      internal::destroy_at(&m_qr);
      internal::construct_at(&m_qr, svd.cols(), svd.rows());
    }
    m_adjoint.resize(svd.cols(), svd.rows());
    if (svd.m_computeFullV) m_workspace.resize(svd.cols());
  }
 
  bool run(SVDType& svd, const MatrixType& matrix) {
    if(matrix.cols() > matrix.rows())
    {
      m_adjoint = matrix.adjoint();
      m_qr.compute(m_adjoint);
      svd.m_workMatrix = m_qr.matrixQR().block(0,0,matrix.rows(),matrix.rows()).template triangularView<Upper>().adjoint();
      if(svd.m_computeFullV) m_qr.matrixQ().evalTo(svd.m_matrixV, m_workspace);
      if(svd.computeU()) svd.m_matrixU = m_qr.colsPermutation();
      return true;
    }
    else return false;
  }
 
private:
  typedef FullPivHouseholderQR<TransposeTypeWithSameStorageOrder> QRType;
  QRType m_qr;
  TransposeTypeWithSameStorageOrder m_adjoint;
  typename plain_row_type<MatrixType>::type m_workspace;
};
 
 
template <typename MatrixType, int Options>
class qr_preconditioner_impl<MatrixType, Options, ColPivHouseholderQRPreconditioner, PreconditionIfMoreRowsThanCols,
                             true> {
 public:
  typedef typename MatrixType::Scalar Scalar;
  typedef JacobiSVD<MatrixType, Options> SVDType;
 
  enum {
    WorkspaceSize = internal::traits<SVDType>::MatrixUColsAtCompileTime,
    MaxWorkspaceSize = internal::traits<SVDType>::MatrixUMaxColsAtCompileTime
  };
 
  typedef Matrix<Scalar, 1, WorkspaceSize, RowMajor, 1, MaxWorkspaceSize> WorkspaceType;
 
  void allocate(const SVDType& svd) {
    if (svd.rows() != m_qr.rows() || svd.cols() != m_qr.cols())
    {
      internal::destroy_at(&m_qr);
      internal::construct_at(&m_qr, svd.rows(), svd.cols());
    }
    if (svd.m_computeFullU) m_workspace.resize(svd.rows());
    else if (svd.m_computeThinU) m_workspace.resize(svd.cols());
  }
 
  bool run(SVDType& svd, const MatrixType& matrix) {
    if(matrix.rows() > matrix.cols())
    {
      m_qr.compute(matrix);
      svd.m_workMatrix = m_qr.matrixQR().block(0,0,matrix.cols(),matrix.cols()).template triangularView<Upper>();
      if(svd.m_computeFullU) m_qr.householderQ().evalTo(svd.m_matrixU, m_workspace);
      else if(svd.m_computeThinU)
      {
        svd.m_matrixU.setIdentity(matrix.rows(), matrix.cols());
        m_qr.householderQ().applyThisOnTheLeft(svd.m_matrixU, m_workspace);
      }
      if(svd.computeV()) svd.m_matrixV = m_qr.colsPermutation();
      return true;
    }
    return false;
  }
 
private:
  typedef ColPivHouseholderQR<MatrixType> QRType;
  QRType m_qr;
  WorkspaceType m_workspace;
};
 
template <typename MatrixType, int Options>
class qr_preconditioner_impl<MatrixType, Options, ColPivHouseholderQRPreconditioner, PreconditionIfMoreColsThanRows,
                             true> {
 public:
  typedef typename MatrixType::Scalar Scalar;
  typedef JacobiSVD<MatrixType, Options> SVDType;
 
  enum {
    RowsAtCompileTime = MatrixType::RowsAtCompileTime,
    ColsAtCompileTime = MatrixType::ColsAtCompileTime,
    MaxRowsAtCompileTime = MatrixType::MaxRowsAtCompileTime,
    MaxColsAtCompileTime = MatrixType::MaxColsAtCompileTime,
    MatrixOptions = MatrixType::Options,
    WorkspaceSize = internal::traits<SVDType>::MatrixVColsAtCompileTime,
    MaxWorkspaceSize = internal::traits<SVDType>::MatrixVMaxColsAtCompileTime
  };
 
  typedef Matrix<Scalar, WorkspaceSize, 1, ColMajor, MaxWorkspaceSize, 1> WorkspaceType;
 
  typedef typename internal::make_proper_matrix_type<Scalar, ColsAtCompileTime, RowsAtCompileTime, MatrixOptions,
                                                     MaxColsAtCompileTime, MaxRowsAtCompileTime>::type
      TransposeTypeWithSameStorageOrder;
 
  void allocate(const SVDType& svd) {
    if (svd.cols() != m_qr.rows() || svd.rows() != m_qr.cols())
    {
      internal::destroy_at(&m_qr);
      internal::construct_at(&m_qr, svd.cols(), svd.rows());
    }
    if (svd.m_computeFullV) m_workspace.resize(svd.cols());
    else if (svd.m_computeThinV) m_workspace.resize(svd.rows());
    m_adjoint.resize(svd.cols(), svd.rows());
  }
 
  bool run(SVDType& svd, const MatrixType& matrix) {
    if(matrix.cols() > matrix.rows())
    {
      m_adjoint = matrix.adjoint();
      m_qr.compute(m_adjoint);
 
      svd.m_workMatrix = m_qr.matrixQR().block(0,0,matrix.rows(),matrix.rows()).template triangularView<Upper>().adjoint();
      if(svd.m_computeFullV) m_qr.householderQ().evalTo(svd.m_matrixV, m_workspace);
      else if(svd.m_computeThinV)
      {
        svd.m_matrixV.setIdentity(matrix.cols(), matrix.rows());
        m_qr.householderQ().applyThisOnTheLeft(svd.m_matrixV, m_workspace);
      }
      if(svd.computeU()) svd.m_matrixU = m_qr.colsPermutation();
      return true;
    }
    else return false;
  }
 
private:
  typedef ColPivHouseholderQR<TransposeTypeWithSameStorageOrder> QRType;
  QRType m_qr;
  TransposeTypeWithSameStorageOrder m_adjoint;
  WorkspaceType m_workspace;
};
 
 
template <typename MatrixType, int Options>
class qr_preconditioner_impl<MatrixType, Options, HouseholderQRPreconditioner, PreconditionIfMoreRowsThanCols, true> {
 public:
  typedef typename MatrixType::Scalar Scalar;
  typedef JacobiSVD<MatrixType, Options> SVDType;
 
  enum {
    WorkspaceSize = internal::traits<SVDType>::MatrixUColsAtCompileTime,
    MaxWorkspaceSize = internal::traits<SVDType>::MatrixUMaxColsAtCompileTime
  };
 
  typedef Matrix<Scalar, 1, WorkspaceSize, RowMajor, 1, MaxWorkspaceSize> WorkspaceType;
 
  void allocate(const SVDType& svd) {
    if (svd.rows() != m_qr.rows() || svd.cols() != m_qr.cols())
    {
      internal::destroy_at(&m_qr);
      internal::construct_at(&m_qr, svd.rows(), svd.cols());
    }
    if (svd.m_computeFullU) m_workspace.resize(svd.rows());
    else if (svd.m_computeThinU) m_workspace.resize(svd.cols());
  }
 
  bool run(SVDType& svd, const MatrixType& matrix) {
    if(matrix.rows() > matrix.cols())
    {
      m_qr.compute(matrix);
      svd.m_workMatrix = m_qr.matrixQR().block(0,0,matrix.cols(),matrix.cols()).template triangularView<Upper>();
      if(svd.m_computeFullU) m_qr.householderQ().evalTo(svd.m_matrixU, m_workspace);
      else if(svd.m_computeThinU)
      {
        svd.m_matrixU.setIdentity(matrix.rows(), matrix.cols());
        m_qr.householderQ().applyThisOnTheLeft(svd.m_matrixU, m_workspace);
      }
      if(svd.computeV()) svd.m_matrixV.setIdentity(matrix.cols(), matrix.cols());
      return true;
    }
    return false;
  }
 
private:
  typedef HouseholderQR<MatrixType> QRType;
  QRType m_qr;
  WorkspaceType m_workspace;
};
 
template <typename MatrixType, int Options>
class qr_preconditioner_impl<MatrixType, Options, HouseholderQRPreconditioner, PreconditionIfMoreColsThanRows, true> {
 public:
  typedef typename MatrixType::Scalar Scalar;
  typedef JacobiSVD<MatrixType, Options> SVDType;
 
  enum {
    RowsAtCompileTime = MatrixType::RowsAtCompileTime,
    ColsAtCompileTime = MatrixType::ColsAtCompileTime,
    MaxRowsAtCompileTime = MatrixType::MaxRowsAtCompileTime,
    MaxColsAtCompileTime = MatrixType::MaxColsAtCompileTime,
    MatrixOptions = MatrixType::Options,
    WorkspaceSize = internal::traits<SVDType>::MatrixVColsAtCompileTime,
    MaxWorkspaceSize = internal::traits<SVDType>::MatrixVMaxColsAtCompileTime
  };
 
  typedef Matrix<Scalar, WorkspaceSize, 1, ColMajor, MaxWorkspaceSize, 1> WorkspaceType;
 
  typedef typename internal::make_proper_matrix_type<Scalar, ColsAtCompileTime, RowsAtCompileTime, MatrixOptions,
                                                     MaxColsAtCompileTime, MaxRowsAtCompileTime>::type
      TransposeTypeWithSameStorageOrder;
 
  void allocate(const SVDType& svd) {
    if (svd.cols() != m_qr.rows() || svd.rows() != m_qr.cols())
    {
      internal::destroy_at(&m_qr);
      internal::construct_at(&m_qr, svd.cols(), svd.rows());
    }
    if (svd.m_computeFullV) m_workspace.resize(svd.cols());
    else if (svd.m_computeThinV) m_workspace.resize(svd.rows());
    m_adjoint.resize(svd.cols(), svd.rows());
  }
 
  bool run(SVDType& svd, const MatrixType& matrix) {
    if(matrix.cols() > matrix.rows())
    {
      m_adjoint = matrix.adjoint();
      m_qr.compute(m_adjoint);
 
      svd.m_workMatrix = m_qr.matrixQR().block(0,0,matrix.rows(),matrix.rows()).template triangularView<Upper>().adjoint();
      if(svd.m_computeFullV) m_qr.householderQ().evalTo(svd.m_matrixV, m_workspace);
      else if(svd.m_computeThinV)
      {
        svd.m_matrixV.setIdentity(matrix.cols(), matrix.rows());
        m_qr.householderQ().applyThisOnTheLeft(svd.m_matrixV, m_workspace);
      }
      if(svd.computeU()) svd.m_matrixU.setIdentity(matrix.rows(), matrix.rows());
      return true;
    }
    else return false;
  }
 
private:
  typedef HouseholderQR<TransposeTypeWithSameStorageOrder> QRType;
  QRType m_qr;
  TransposeTypeWithSameStorageOrder m_adjoint;
  WorkspaceType m_workspace;
};
 
 
template <typename MatrixType, int Options>
struct svd_precondition_2x2_block_to_be_real<MatrixType, Options, false> {
  typedef JacobiSVD<MatrixType, Options> SVD;
  typedef typename MatrixType::RealScalar RealScalar;
  static bool run(typename SVD::WorkMatrixType&, SVD&, Index, Index, RealScalar&) { return true; }
};
 
template <typename MatrixType, int Options>
struct svd_precondition_2x2_block_to_be_real<MatrixType, Options, true> {
  typedef JacobiSVD<MatrixType, Options> SVD;
  typedef typename MatrixType::Scalar Scalar;
  typedef typename MatrixType::RealScalar RealScalar;
  static bool run(typename SVD::WorkMatrixType& work_matrix, SVD& svd, Index p, Index q, RealScalar& maxDiagEntry)
  {
    using std::sqrt;
    using std::abs;
    Scalar z;
    JacobiRotation<Scalar> rot;
    RealScalar n = sqrt(numext::abs2(work_matrix.coeff(p,p)) + numext::abs2(work_matrix.coeff(q,p)));
 
    const RealScalar considerAsZero = (std::numeric_limits<RealScalar>::min)();
    const RealScalar precision = NumTraits<Scalar>::epsilon();
 
    if(numext::is_exactly_zero(n))
    {
      // make sure first column is zero
      work_matrix.coeffRef(p,p) = work_matrix.coeffRef(q,p) = Scalar(0);
 
      if(abs(numext::imag(work_matrix.coeff(p,q)))>considerAsZero)
      {
        // work_matrix.coeff(p,q) can be zero if work_matrix.coeff(q,p) is not zero but small enough to underflow when computing n
        z = abs(work_matrix.coeff(p,q)) / work_matrix.coeff(p,q);
        work_matrix.row(p) *= z;
        if(svd.computeU()) svd.m_matrixU.col(p) *= conj(z);
      }
      if(abs(numext::imag(work_matrix.coeff(q,q)))>considerAsZero)
      {
        z = abs(work_matrix.coeff(q,q)) / work_matrix.coeff(q,q);
        work_matrix.row(q) *= z;
        if(svd.computeU()) svd.m_matrixU.col(q) *= conj(z);
      }
      // otherwise the second row is already zero, so we have nothing to do.
    }
    else
    {
      rot.c() = conj(work_matrix.coeff(p,p)) / n;
      rot.s() = work_matrix.coeff(q,p) / n;
      work_matrix.applyOnTheLeft(p,q,rot);
      if(svd.computeU()) svd.m_matrixU.applyOnTheRight(p,q,rot.adjoint());
      if(abs(numext::imag(work_matrix.coeff(p,q)))>considerAsZero)
      {
        z = abs(work_matrix.coeff(p,q)) / work_matrix.coeff(p,q);
        work_matrix.col(q) *= z;
        if(svd.computeV()) svd.m_matrixV.col(q) *= z;
      }
      if(abs(numext::imag(work_matrix.coeff(q,q)))>considerAsZero)
      {
        z = abs(work_matrix.coeff(q,q)) / work_matrix.coeff(q,q);
        work_matrix.row(q) *= z;
        if(svd.computeU()) svd.m_matrixU.col(q) *= conj(z);
      }
    }
 
    // update largest diagonal entry
    maxDiagEntry = numext::maxi<RealScalar>(maxDiagEntry,numext::maxi<RealScalar>(abs(work_matrix.coeff(p,p)), abs(work_matrix.coeff(q,q))));
    // and check whether the 2x2 block is already diagonal
    RealScalar threshold = numext::maxi<RealScalar>(considerAsZero, precision * maxDiagEntry);
    return abs(work_matrix.coeff(p,q))>threshold || abs(work_matrix.coeff(q,p)) > threshold;
  }
};
 
template <typename MatrixType_, int Options>
struct traits<JacobiSVD<MatrixType_, Options> > : svd_traits<MatrixType_, Options> {
  typedef MatrixType_ MatrixType;
};
 
} // end namespace internal
 
template <typename MatrixType_, int Options_>
class JacobiSVD : public SVDBase<JacobiSVD<MatrixType_, Options_> > {
  typedef SVDBase<JacobiSVD> Base;
 
 public:
  typedef MatrixType_ MatrixType;
  typedef typename Base::Scalar Scalar;
  typedef typename Base::RealScalar RealScalar;
  typedef typename Base::Index Index;
  enum {
    Options = Options_,
    QRPreconditioner = internal::get_qr_preconditioner(Options),
    RowsAtCompileTime = Base::RowsAtCompileTime,
    ColsAtCompileTime = Base::ColsAtCompileTime,
    DiagSizeAtCompileTime = Base::DiagSizeAtCompileTime,
    MaxRowsAtCompileTime = Base::MaxRowsAtCompileTime,
    MaxColsAtCompileTime = Base::MaxColsAtCompileTime,
    MaxDiagSizeAtCompileTime = Base::MaxDiagSizeAtCompileTime,
    MatrixOptions = Base::MatrixOptions
  };
 
  typedef typename Base::MatrixUType MatrixUType;
  typedef typename Base::MatrixVType MatrixVType;
  typedef typename Base::SingularValuesType SingularValuesType;
  typedef Matrix<Scalar, DiagSizeAtCompileTime, DiagSizeAtCompileTime, MatrixOptions, MaxDiagSizeAtCompileTime,
                 MaxDiagSizeAtCompileTime>
      WorkMatrixType;
 
  JacobiSVD() {}
 
  JacobiSVD(Index rows, Index cols) { allocate(rows, cols, internal::get_computation_options(Options)); }
 
  EIGEN_DEPRECATED
  JacobiSVD(Index rows, Index cols, unsigned int computationOptions) {
    internal::check_svd_options_assertions<MatrixType, Options>(computationOptions, rows, cols);
    allocate(rows, cols, computationOptions);
  }
 
  explicit JacobiSVD(const MatrixType& matrix) { compute_impl(matrix, internal::get_computation_options(Options)); }
 
  // EIGEN_DEPRECATED // TODO(cantonios): re-enable after fixing a few 3p libraries that error on deprecation warnings.
  JacobiSVD(const MatrixType& matrix, unsigned int computationOptions) {
    internal::check_svd_options_assertions<MatrixType, Options>(computationOptions, matrix.rows(), matrix.cols());
    compute_impl(matrix, computationOptions);
  }
 
  JacobiSVD& compute(const MatrixType& matrix) { return compute_impl(matrix, m_computationOptions); }
 
  EIGEN_DEPRECATED
  JacobiSVD& compute(const MatrixType& matrix, unsigned int computationOptions) {
    internal::check_svd_options_assertions<MatrixType, Options>(m_computationOptions, matrix.rows(), matrix.cols());
    return compute_impl(matrix, computationOptions);
  }
 
  using Base::computeU;
  using Base::computeV;
  using Base::rows;
  using Base::cols;
  using Base::rank;
 
 private:
  void allocate(Index rows, Index cols, unsigned int computationOptions);
  JacobiSVD& compute_impl(const MatrixType& matrix, unsigned int computationOptions);
 
 protected:
  using Base::m_cols;
  using Base::m_computationOptions;
  using Base::m_computeFullU;
  using Base::m_computeFullV;
  using Base::m_computeThinU;
  using Base::m_computeThinV;
  using Base::m_diagSize;
  using Base::m_info;
  using Base::m_isAllocated;
  using Base::m_isInitialized;
  using Base::m_matrixU;
  using Base::m_matrixV;
  using Base::m_nonzeroSingularValues;
  using Base::m_prescribedThreshold;
  using Base::m_rows;
  using Base::m_singularValues;
  using Base::m_usePrescribedThreshold;
  using Base::ShouldComputeThinU;
  using Base::ShouldComputeThinV;
 
  EIGEN_STATIC_ASSERT(!(ShouldComputeThinU && int(QRPreconditioner) == int(FullPivHouseholderQRPreconditioner)) &&
                          !(ShouldComputeThinU && int(QRPreconditioner) == int(FullPivHouseholderQRPreconditioner)),
                      "JacobiSVD: can't compute thin U or thin V with the FullPivHouseholderQR preconditioner. "
                      "Use the ColPivHouseholderQR preconditioner instead.")
 
  template <typename MatrixType__, int Options__, bool IsComplex_>
  friend struct internal::svd_precondition_2x2_block_to_be_real;
  template <typename MatrixType__, int Options__, int QRPreconditioner_, int Case_, bool DoAnything_>
  friend struct internal::qr_preconditioner_impl;
 
  internal::qr_preconditioner_impl<MatrixType, Options, QRPreconditioner, internal::PreconditionIfMoreColsThanRows>
      m_qr_precond_morecols;
  internal::qr_preconditioner_impl<MatrixType, Options, QRPreconditioner, internal::PreconditionIfMoreRowsThanCols>
      m_qr_precond_morerows;
  WorkMatrixType m_workMatrix;
  MatrixType m_scaledMatrix;
};
 
template <typename MatrixType, int Options>
void JacobiSVD<MatrixType, Options>::allocate(Index rows, Index cols, unsigned int computationOptions) {
  if (Base::allocate(rows, cols, computationOptions)) return;
 
  eigen_assert(!(ShouldComputeThinU && int(QRPreconditioner) == int(FullPivHouseholderQRPreconditioner)) &&
               !(ShouldComputeThinU && int(QRPreconditioner) == int(FullPivHouseholderQRPreconditioner)) &&
               "JacobiSVD: can't compute thin U or thin V with the FullPivHouseholderQR preconditioner. "
               "Use the ColPivHouseholderQR preconditioner instead.");
 
  m_workMatrix.resize(m_diagSize, m_diagSize);
  if(m_cols>m_rows)   m_qr_precond_morecols.allocate(*this);
  if(m_rows>m_cols)   m_qr_precond_morerows.allocate(*this);
  if(m_rows!=m_cols)  m_scaledMatrix.resize(rows,cols);
}
 
template <typename MatrixType, int Options>
JacobiSVD<MatrixType, Options>& JacobiSVD<MatrixType, Options>::compute_impl(const MatrixType& matrix,
                                                                             unsigned int computationOptions) {
  using std::abs;
 
  allocate(matrix.rows(), matrix.cols(), computationOptions);
 
  // currently we stop when we reach precision 2*epsilon as the last bit of precision can require an unreasonable number of iterations,
  // only worsening the precision of U and V as we accumulate more rotations
  const RealScalar precision = RealScalar(2) * NumTraits<Scalar>::epsilon();
 
  // limit for denormal numbers to be considered zero in order to avoid infinite loops (see bug 286)
  const RealScalar considerAsZero = (std::numeric_limits<RealScalar>::min)();
 
  // Scaling factor to reduce over/under-flows
  RealScalar scale = matrix.cwiseAbs().template maxCoeff<PropagateNaN>();
  if (!(numext::isfinite)(scale)) {
    m_isInitialized = true;
    m_info = InvalidInput;
    m_nonzeroSingularValues = 0;
    return *this;
  }
  if(numext::is_exactly_zero(scale)) scale = RealScalar(1);
  
 
  if(m_rows!=m_cols)
  {
    m_scaledMatrix = matrix / scale;
    m_qr_precond_morecols.run(*this, m_scaledMatrix);
    m_qr_precond_morerows.run(*this, m_scaledMatrix);
  }
  else
  {
    m_workMatrix = matrix.block(0,0,m_diagSize,m_diagSize) / scale;
    if(m_computeFullU) m_matrixU.setIdentity(m_rows,m_rows);
    if(m_computeThinU) m_matrixU.setIdentity(m_rows,m_diagSize);
    if(m_computeFullV) m_matrixV.setIdentity(m_cols,m_cols);
    if(m_computeThinV) m_matrixV.setIdentity(m_cols, m_diagSize);
  }
 
 
  RealScalar maxDiagEntry = m_workMatrix.cwiseAbs().diagonal().maxCoeff();
 
  bool finished = false;
  while(!finished)
  {
    finished = true;
 
    // do a sweep: for all index pairs (p,q), perform SVD of the corresponding 2x2 sub-matrix
 
    for(Index p = 1; p < m_diagSize; ++p)
    {
      for(Index q = 0; q < p; ++q)
      {
        // if this 2x2 sub-matrix is not diagonal already...
        // notice that this comparison will evaluate to false if any NaN is involved, ensuring that NaN's don't
        // keep us iterating forever. Similarly, small denormal numbers are considered zero.
        RealScalar threshold = numext::maxi<RealScalar>(considerAsZero, precision * maxDiagEntry);
        if(abs(m_workMatrix.coeff(p,q))>threshold || abs(m_workMatrix.coeff(q,p)) > threshold)
        {
          finished = false;
          // perform SVD decomposition of 2x2 sub-matrix corresponding to indices p,q to make it diagonal
          // the complex to real operation returns true if the updated 2x2 block is not already diagonal
          if (internal::svd_precondition_2x2_block_to_be_real<MatrixType, Options>::run(m_workMatrix, *this, p, q,
                                                                                        maxDiagEntry)) {
            JacobiRotation<RealScalar> j_left, j_right;
            internal::real_2x2_jacobi_svd(m_workMatrix, p, q, &j_left, &j_right);
 
            // accumulate resulting Jacobi rotations
            m_workMatrix.applyOnTheLeft(p,q,j_left);
            if(computeU()) m_matrixU.applyOnTheRight(p,q,j_left.transpose());
 
            m_workMatrix.applyOnTheRight(p,q,j_right);
            if(computeV()) m_matrixV.applyOnTheRight(p,q,j_right);
 
            // keep track of the largest diagonal coefficient
            maxDiagEntry = numext::maxi<RealScalar>(maxDiagEntry,numext::maxi<RealScalar>(abs(m_workMatrix.coeff(p,p)), abs(m_workMatrix.coeff(q,q))));
          }
        }
      }
    }
  }
 
 
  for(Index i = 0; i < m_diagSize; ++i)
  {
    // For a complex matrix, some diagonal coefficients might note have been
    // treated by svd_precondition_2x2_block_to_be_real, and the imaginary part
    // of some diagonal entry might not be null.
    if(NumTraits<Scalar>::IsComplex && abs(numext::imag(m_workMatrix.coeff(i,i)))>considerAsZero)
    {
      RealScalar a = abs(m_workMatrix.coeff(i,i));
      m_singularValues.coeffRef(i) = abs(a);
      if(computeU()) m_matrixU.col(i) *= m_workMatrix.coeff(i,i)/a;
    }
    else
    {
      // m_workMatrix.coeff(i,i) is already real, no difficulty:
      RealScalar a = numext::real(m_workMatrix.coeff(i,i));
      m_singularValues.coeffRef(i) = abs(a);
      if(computeU() && (a<RealScalar(0))) m_matrixU.col(i) = -m_matrixU.col(i);
    }
  }
  
  m_singularValues *= scale;
 
 
  m_nonzeroSingularValues = m_diagSize;
  for(Index i = 0; i < m_diagSize; i++)
  {
    Index pos;
    RealScalar maxRemainingSingularValue = m_singularValues.tail(m_diagSize-i).maxCoeff(&pos);
    if(numext::is_exactly_zero(maxRemainingSingularValue))
    {
      m_nonzeroSingularValues = i;
      break;
    }
    if(pos)
    {
      pos += i;
      std::swap(m_singularValues.coeffRef(i), m_singularValues.coeffRef(pos));
      if(computeU()) m_matrixU.col(pos).swap(m_matrixU.col(i));
      if(computeV()) m_matrixV.col(pos).swap(m_matrixV.col(i));
    }
  }
 
  m_isInitialized = true;
  return *this;
}
 
template <typename Derived>
template <int Options>
JacobiSVD<typename MatrixBase<Derived>::PlainObject, Options> MatrixBase<Derived>::jacobiSvd() const {
  return JacobiSVD<PlainObject, Options>(*this);
}
 
template <typename Derived>
template <int Options>
JacobiSVD<typename MatrixBase<Derived>::PlainObject, Options> MatrixBase<Derived>::jacobiSvd(
    unsigned int computationOptions) const {
  return JacobiSVD<PlainObject, Options>(*this, computationOptions);
}
 
}  // end namespace Eigen
 
#endif // EIGEN_JACOBISVD_H